Generalized Einstein or Green-Kubo relations for active biomolecular transport

For driven Markovian dynamics on a network of (biomolecular) states, the generalized mobilities, i.e., the response of any current to changes in an external parameter, are expressed by an integral over an appropriate current-current correlation function and thus related to the generalized diffusion constants. As only input, a local detailed balance condition is required typically even valid for biomolecular systems operating deep in the non-equilibrium regime.Comment: 4 page

Micromagnetic Simulation of Non Uniform Nanodots with Perpendicular Anisotropy

Multilayered Pt/[Co/Pt]/sub 5/ films were fabricated into patterned dots with diameters of 120 and 200 nm by laser interference lithography. Anomalous Hall effect (AHE) measurements were used on an array of dots to measure the switching field and the effects of reversal of an area with reduced anisotropy in the dot were also investigated by micromagnetic simulation. It was shown that a reduction in switching field is caused by an area of reduced anisotropy. The effect of various combinations of a reduction in anisotropy and/or exchange constant, and the size and shape of the area were also discussed in this paper

Dynamical Susceptibility in KDP-type Crysals above and below Tc II

The path probability method (PPM) in the tetrahedron-cactus approximation is applied to the Slater-Takagi model with dipole-dipole interaction for KH2PO4-type hydrogen-bonded ferroelectric crystals in order to derive a small dip structure in the real part of dynamical susceptibility observed at the transition temperature Tc. The dip structure can be ascribed to finite relaxation times of electric dipole moments responsible for the first order transition with contrast to the critical slowing down in the second order transition. The light scattering intensity which is related to the imaginary part of dynamical susceptibility is also calculated above and below the transition temperature and the obtained central peak structure is consistent with polarization fluctuation modes in Raman scattering experiments.Comment: 8 pages, 11 figure

Constraints on unparticle long range forces from big bang nucleosynthesis bounds on the variation of the gravitational coupling

We use big bang nucleosynthesis bounds on the variation of the gravitational coupling to derive constraints on the strength of the deviation from the gravitational inverse-square law due to tensor and vector unparticle exchange.Comment: 4 pages, 3 figures, change in the title and other minor changes to match version published in Physical Review

Transport coefficients of a mesoscopic fluid dynamics model

We investigate the properties of stochastic rotation dynamics (Malevanets-Kapral method), a mesoscopic model used for simulating fluctuating hydrodynamics. Analytical results are given for the transport coefficients. We discuss the most efficient way of measuring the transport properties and obtain excellent agreement between the theoretical and numerical calculations.Comment: 12 pages, 9 figures, submitted to J. Chem. Phy

Kinetically driven helix formation during the homopolymer collapse process

Using Langevin simulations, we find that simple 'generic' bead-and-spring homopolymer chains in a sufficiently bad solvent spontaneously develop helical order during the process of collapsing from an initially stretched conformation. The helix formation is initiated by the unstable modes of the straight chain, which drive the system towards a long-lived metastable transient state. The effect is most pronounced if hydrodynamic interactions are screened.Comment: 4 pages, 4 figure

Continuum Electromechanical Modeling of Protein-Membrane Interaction

A continuum electromechanical model is proposed to describe the membrane curvature induced by electrostatic interactions in a solvated protein-membrane system. The model couples the macroscopic strain energy of membrane and the electrostatic solvation energy of the system, and equilibrium membrane deformation is obtained by minimizing the electro-elastic energy functional with respect to the dielectric interface. The model is illustrated with the systems with increasing geometry complexity and captures the sensitivity of membrane curvature to the permanent and mobile charge distributions.Comment: 5 pages, 12 figure